Jerome Baudry, Ph.D. Mrs. Pei-Ling Chan Chair & Professor, Biological Sciences Interim Department Chair, Biological Sciences Contact 301 Sparkman DriveShelby CenterRoom 302KHuntsville, AL 35899 Campus Map 256.824.4326jerome.baudry@uah.edu Biography Professor Jerome Baudry is the Mrs. Pei-Ling Chan Professor of Biological Sciences, University of Alabama, Huntsville; Department of Biological Sciences. Dr. Baudry obtained his Ph.D. in Molecular Biophysics with the highest Honors from the University of Paris, UPMC/Sorbonne Universities, France. He subsequently joined the group of Klaus Schulten at the University of Illinois at Urbana-Champaign as a post-doc. After his post-doctoral work, Dr. Baudry worked in the pharmaceutical industry as a Research Scientist, and then accepted a Senior Research Scientist position back in Illinois on a non-tenure track research faculty position. Dr. Baudry joined the University of Tennessee, Knoxville and the UT/ORNL Center for Molecular Biophysics as a tenure track Assistant Professor in 2008. In 2014, he was promoted to Associate Professor with tenure. In August 2017, Dr. Baudry joined UAH as the Mrs. Pei-Ling Chan Professor. At UAH, Dr. Baudry's group develops and applies methods and protocols for computational drug discovery, both on small-molecules and biologicals, within academic, national laboratories and industrial collaborations. Curriculum Vitae Research Website Education Ph.D., Molecular Biophysics, University of Paris UPMC - Sorbonne Universités, Paris, France, Highest Honors ("Très Honorable avec Félicitations") Expertise Drug discovery Computational biology Molecular biophysics Pharmaceuticals Molecular modeling Recent Publications Structure based virtual screening identifies small molecule effectors for the sialoglycan binding protein HsaR Agarwal, BA Bensing, D Mi, PN Vinson, J Baudry, TM Iverson, JC Smith Biochemical Journal 477 (19), 3695-3707, 2020 Supercomputer-based ensemble docking drug discovery pipeline with application to Covid-19 A Acharya, R Agarwal, M Baker, J Baudry, D Bhowmik, S Boehm, et al. ChemRxiv 2020 Structure-based group A streptococcal vaccine design: Helical wheel homology predicts antibody cross-reactivity among streptococcal M protein–derived peptides MP Aranha, TA Penfound, JA Spencer, R Agarwal, J Baudry, JB Dale, ...Journal of Biological Chemistry 295 (12), 3826-3836, 2020 Sequential dynamics of Stearoyl-CoA Desaturase-1 (SCD1)/ligand binding and unbinding mechanism: A computational study A Petroff, RL Weir, CR Yates, JD Ng, J Baudry, bioRxiv, 2020 High Performance Computing Prediction of Potential Natural Product Inhibitors of SARS-CoV-2 Key Targets. K. Byler, J Landman, J Baudry ChemRxiv 2020 Structure based virtual screening identifies novel competitive inhibitors for the sialoglycan binding protein HsaR Agarwal, BA Bensing, D Mi, PN Vinson, J Baudry, TM Iverson, JC Smith bioRxiv, 2020 Novel K-Means Clustering-based Undersampling and Feature Selection for Drug Discovery Applications VS Akondi, V Menon, J Baudry, J Whittle 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019 Ligand-Dependent Sodium Ion Dynamics within the A2A Adenosine Receptor: A Molecular Dynamics StudyX Hu, MD Smith, BM Humphreys, AT Green, JM Parks, JY Baudry, et al. The Journal of Physical Chemistry B 123 (38), 7947-7954, 2019 Interdimer zipping in the chemoreceptor signaling domain revealed by molecular dynamics simulations MG Petukh, DR Ortega, J Baudry, IB Zhulin Ensemble Docking in Drug Discovery: How Many Protein Configurations from Molecular Dynamics Simulations Are Needed to Reproduce Known Ligand Binding? W Evangelista, SR Ellingson, JC Smith, JY Baudry The Journal of Physical Chemistry B
